Add closest string 2

closest_string_assignment_2/Cargo.lock

@@ -0,0 +1,324 @@
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+# It is not intended for manual editing.
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+
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closest_string_assignment_2/Cargo.toml

@@ -0,0 +1,10 @@
+[package]
+name = "closest_string_assignment_2"
+version = "0.1.0"
+edition = "2021"
+
+[dependencies]
+clap = { version = "4.5.26", features = ["derive"] }
+good_lp = "1.11.0"
+gurobi = "0.3.4"
+itertools = "0.14.0"

closest_string_assignment_2/src/main.rs

@@ -0,0 +1,106 @@
+use std::path::{Path, PathBuf};
+
+use clap::Parser;
+use gurobi::*;
+use itertools::Itertools;
+
+fn read_input(filename: impl AsRef<Path>) -> Vec<Vec<u8>> {
+    let text = std::fs::read_to_string(filename).unwrap();
+
+    let mut r = Vec::new();
+
+    for line in text.lines().skip(1) {
+        r.push(line.as_bytes().to_vec());
+    }
+
+    r
+}
+
+#[derive(Debug, Parser)]
+struct Args {
+    filename: PathBuf,
+}
+
+fn solve(input: &[Vec<u8>], d: usize) {
+    let mut columns = Vec::new();
+
+    for i in 0..input[0].len() {
+        let mut nextfree: u8 = 0;
+        let mut c = Vec::new();
+
+        for l in 0..input.len() {
+            if let Some(n) = input[0..l].iter().position(|r| r[i] == input[l][i]) {
+                c.push(c[n]);
+            } else {
+                c.push(nextfree);
+                nextfree += 1;
+            }
+        }
+
+        columns.push(c);
+    }
+
+    let counts = columns.iter().counts();
+
+    let env = Env::new("logfile.log").unwrap();
+
+    let mut model = Model::new("model1", &env).unwrap();
+
+    let mut variables = Vec::new();
+
+    for (k, &c) in &counts {
+        let mut v = Vec::new();
+        let mut sum = LinExpr::new();
+        for i in 0..=(k.iter().max().copied().unwrap()) {
+            let var = model
+                .add_var(
+                    &format!("{:?}:{}", k, i),
+                    Integer,
+                    0.0,
+                    -INFINITY,
+                    INFINITY,
+                    &[],
+                    &[],
+                )
+                .unwrap();
+
+            sum = sum + &var;
+            v.push(var);
+        }
+
+        model
+            .add_constr(&format!("{:?}", k), sum, Equal, c as f64)
+            .unwrap();
+        variables.push(v);
+    }
+
+    for i in 0..input.len() {
+        let mut sum = LinExpr::new();
+
+        for (l, (k, _)) in counts.iter().enumerate() {
+            for j in 0..input.len() {
+                if k[i] != k[j] {
+                    sum = sum + &variables[l][k[j] as usize];
+                }
+            }
+        }
+
+        model
+            .add_constr(&format!("{:?}", i), sum, Less, d as f64)
+            .unwrap();
+    }
+
+    model.update().unwrap();
+
+    model.optimize().unwrap();
+
+    dbg!(model.status().unwrap());
+}
+
+fn main() {
+    let args = Args::parse();
+
+    let input = read_input(args.filename);
+
+    solve(&input, 6);
+}

closest_string_assignment_2/string0.in

@@ -0,0 +1,11 @@
+10
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closest_string_assignment_2/string1.in

@@ -0,0 +1,11 @@
+10
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closest_string_assignment_2/string2.in

@@ -0,0 +1,27 @@
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closest_string_assignment_2/validator.py

@@ -0,0 +1,22 @@
+"""
+    usage: python3 validator.py path/to/input path/to/output
+"""
+
+import sys
+
+input_file = open(sys.argv[1], "r")
+
+sol_file = open(sys.argv[2], "r")
+
+n = int(input_file.readline().strip())
+strings = [l.strip() for l in input_file.readlines()[1:]]
+
+s = sol_file.readline().strip()
+
+if len(s) != len(strings[0]):
+    print("Lengths of strings do not match")
+    quit()
+
+dist = max([sum(c1 != c2 for c1, c2 in zip(s, string)) for string in strings])
+
+print("String has max distance {}".format(dist))